[Duo-ee]

Summary

Fixes #4453 by rejecting Zarr v3 node names that are reserved by the format: names beginning with __, the exact name zarr.json, and names made only of periods. The validation runs before metadata is written, preventing hierarchies that cannot be discovered or reopened reliably. Zarr v2 behavior remains unchanged.

For reviewers

The two pyproject.toml files now preserve LF line endings; the default diff shows the single dependency-pin change in each file.

Please focus on the validation boundary across array creation, group creation, hierarchy creation, and metadata writes. The tests cover each reserved-name rule, nested paths, v2 compatibility, and the no-write-on-failure behavior.

Validation run locally:

• pytest tests/test_group.py — 990 passed, 209 skipped
• pytest tests/test_metadata/test_io.py tests/test_api.py tests/test_array.py — 2942 passed, 765 skipped
• Changed-file mypy, Ruff, formatting, and applicable pre-commit hooks passed.

AI assistance was used to inspect the existing code path, draft the implementation and tests, and run the validation listed above. The PR author later stated in a follow-up comment that they personally reviewed and understood the final diff. The validation results above remain agent-executed.

Author attestation

• I am a human, these are my changes, and I have reviewed and understood every change and can explain why each is correct.

TODO

• Add unit tests and/or doctests in docstrings
• Add docstrings and API docs for any new/modified user-facing classes and functions
• New/modified features documented in docs/user-guide/*.md
• Changes documented as a new file in changes/
• GitHub Actions on the current head: 52 successful, 3 skipped; all required checks passed.
• Codecov on the current head reports all modified coverable lines covered; project coverage: 94.71%.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.90%. Comparing base (a614332) to head (05671a1).

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #4551   +/-   ##
=======================================
  Coverage   94.90%   94.90%           
=======================================
  Files          96       96           
  Lines       14048    14057    +9     
=======================================
+ Hits        13332    13341    +9     
  Misses        716      716           

Files with missing lines	Coverage Δ
src/zarr/core/common.py	94.00% <100.00%> (+0.17%)	⬆️
src/zarr/core/group.py	95.69% <100.00%> (+<0.01%)	⬆️
src/zarr/core/metadata/io.py	100.00% <100.00%> (ø)

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[Duo-ee]

Update: I have now personally reviewed and understand every change in the diff, and can explain why each is correct. The AI assistance and validation disclosures above remain accurate.

[read-the-docs-community]

Documentation build overview

📚 zarr-metadata | 🛠️ Build #35839458 | 📁 Comparing 05671a1 against latest (f19c19c)

  🔍 Preview build  

26 files changed · + 13 added · ± 13 modified

+ Added

• consolidated-metadata/index.html
• context/index.html
• extensions/index.html
• json-schema/index.html
• models/index.html
• parsing-validation/index.html
• pydantic/index.html
• repair/index.html
• validation-rules/index.html
• api/definition/index.html
• and 3 more...

± Modified

• index.html
• api/index.html
• release-notes/index.html
• api/model/index.html
• api/pydantic/index.html
• api/typed_json/index.html
• api/v2/index.html
• api/v3/index.html
• api/v3/chunk_grid/index.html
• api/v3/chunk_key_encoding/index.html
• and 3 more...

[Duo-ee]

The whole batch from 2026-11-09 06:06Z failed in the setup phase: every job hit 504 Gateway Timeout while downloading just / hatch binaries, so no tests actually ran. The previous batch on this branch (2026-10-30) was green, and the only change since then is a changelog filename fix, so this looks like a transient GitHub Actions outage rather than a problem with the PR.

I do not have admin rights on this repository, so I cannot re-run the failed jobs myself. Could a maintainer re-run them? The branch is also BEHIND main at the moment.

[Duo-ee]

Synced the branch with main (merge commit 0914544f), which also retires the 2026-11-09 batch — that one was a GitHub Actions 504 gateway episode, every job died downloading just/hatch before any test ran. The new run is complete: 57 passed, 3 skipped, 0 failed (ubuntu/macos/windows × py3.11–3.15, minimal/optional deps, benchmark smoke, slow hypothesis, docs). The diff itself is unchanged — it still only rejects the reserved v3 node names (meta/data) at the store boundary.